A

Azodi, Christina B. ORCID: 0000-0002-6097-606X, McCarren, Andrew ORCID: 0000-0002-7297-0984, Roantree, Mark ORCID: 0000-0002-1329-2570, Gustavo, de los Campos ORCID: 0000-0001-5692-7129 and Shiu, Shin-Han ORCID: 0000-0001-6470-235X (2019) Benchmarking algorithms for genomic prediction of complex traits. G3: Genes, Genomes, Genetics, 9 (11). pp. 3691-3702. ISSN 2160-1836

B

Bookey, Niamh (2022) Unravelling the role of the human dihydrofolate reductase 2 gene. PhD thesis, Dublin City University.

C

Cowley-Cunningham, Michelle ORCID: 0000-0002-1997-6009 (2017) ‘The innocent v the fickle few’: how jurors understand random-match-probabilities and judges’ directions when reasoning about DNA and refuting evidence. International Journal of Forensic Science & Criminal Investigation, 3 (5). ISSN 2476-1311

Cooke, Colm (2014) Siderophore mediated iron acquisation by Sinorhizobium meliloti. PhD thesis, Dublin City University.

Coughlan, Simone, Barreira, Sofia, Seoighe, Cathal and Downing, Tim (2014) Genome-wide variant discovery using sequence assembly, mapping and population-wide analysis. In: Bioinformatics and data analysis in microbiology. Caister Academic Press.

Connell, Sarah, Meade, Kieran G., Allan, Brenda, Lloyd, Andrew T., Downing, Tim, O'Farrelly, Cliona and Bradley, Daniel G. (2013) Genome-wide association analysis of avian resistance to Campylobacter jejuni colonization identifies risk locus spanning the CDH13 gene. G3, 3 (5). pp. 881-890. ISSN 2160-1836

Carroll, Nicola, Pangilinan, Faith, Molloy, Anne M., Troendle, James, Mills, James L., Kirke, Peadar N., Brody, Lawrence C., Scott, John M. and Parle-McDermott, Anne ORCID: 0000-0002-1533-3209 (2009) Analysis of the MTHFD1 promoter and risk of neural tube defects. Human Genetics, 125 (3). pp. 247-256. ISSN 1913-0090

D

Drago, Paola (2022) Deciphering the function of the human dihydrofolate reductase 2 gene. PhD thesis, Dublin City University.

Decano, Arun Gonzales ORCID: 0000-0002-6058-6483 (2019) A population phylogenomic analysis of the origin and spread of Escherichia coli sequence type 131 (ST131). PhD thesis, Dublin City University.

Downing, Tim (2016) Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent. Elife, 2016 (5). p. 12613. ISSN 2050-084X

Downing, Tim (2015) Tackling drug resistant infection outbreaks of global pandemic Escherichia coli ST131 using evolutionary and epidemiological genomics. Microorganisms, 2015 (3). pp. 236-267. ISSN 2076-2607

Donohoe, Owen (2013) An investigation into the existence of cyprinid herpesvirus-3 encoded microRNAs. PhD thesis, Dublin City University.

Downing, Tim (2012) The battle of the SNPs. Nature Reviews Microbiology, 10 (6). ISSN 1740-1534

Downing, Tim and Imamura, Hideo (2011) Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Genome Research, 2011 (21). pp. 2143-2156. ISSN 1549-5469

Downing, Tim (2010) Variation in chicken populations may affect the enzymatic activity of lysozyme. Animal Genetics, 41 (2). pp. 213-217. ISSN 1365-2052

Downing, Tim, Cormican, Paul, O'Farrelly, Cliona, Bradley, Daniel G. and Lloyd, Andrew T. (2009) Evidence of the adaptive evolution of immune genes in chicken. BMC Research Notes, 2 (254). ISSN 1756-0500

Downing, Tim (2009) Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus. BMC Evolutionary Biology, 9 (136). ISSN 1471-2148

Donnelly, Daniel Finbarr (1990) Chemical, cytological and genetic analysis of a surface mutant of tf rhizobium leguminosarum bIOVAR viciae. PhD thesis, Dublin City University.

H

Harrison, Alan (2015) Folic acid: investigation of its relevance for DNA methylation and the enzymes that reduce it. PhD thesis, Dublin City University.

Hayes, Catriona Ann (2015) Intrinsic and extrinsic factors affecting proteasome inhibitor resistance in multiple myeloma. PhD thesis, Dublin City University.

K

Kelly, Helena and Downing, Tim (2015) Cross platform standardisation and normalisation experimental pipeline for use in the biodiscovery of dysregulated human circulating miRNAs. PLOS ONE, 10 (9). 0137389-0137389. ISSN 1932-6203

M

Mac Cooey, Aoife (2015) The role of mitochondrial folate enzymes in cancer. Master of Science thesis, Dublin City University.

McRae, Kathryn M. (2015) Identification of variation in the sheep genome controlling gastrointestinal nematode resistance. PhD thesis, Dublin City University.

Mac Donnell, Brian (2014) The role of cyclic strain on miRNA mediated human aortic smooth muscle cell (HAoSMC) dynamics. PhD thesis, Dublin City University.

McEntee, Grainne (2013) A pseudogene or not a pseudogene: that is the question? PhD thesis, Dublin City University.

Mannaert, An, Downing, Tim, Imamura, Hideo and Dujardin, Jean-Claude (2012) Adaptive mechanisms in pathogens: universal aneuploidy in Leishmania. Trends in Parasitology, 28 (9). pp. 370-376. ISSN 1471-4922

McMorrow, Jason (2004) Transcriptional regulation of chemically induced epithelial lung cell differentiation, in vitro. PhD thesis, Dublin City University.

O

Ozaki, Mari (2015) Investigation of gene specific DNA methylation and folate polymorphisms and their relevance for human health and disease. PhD thesis, Dublin City University.

R

Rogers, Matthew B. and Downing, Tim (2014) Genomic confirmation of hybridisation and recent inbreeding in a vector-isolated Leishmania population. Plos genetics, 10 (1). p. 1004092. ISSN 1553-7404

S

Sheehan, Helena (2021) The synthesizing impulse. Monthly Review, 73 (5). pp. 55-59. ISSN 0027-0520

Sheehan, Helena (2021) John Desmond Bernal, Marxism and Scientific Revolution. Jacobin . ISSN 2470 6930

Shaw, C.D., Lonchamp, J., Downing, Tim and Imamura, Hideo (2016) In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterisation. Molecular Microbiology, 99 (6). pp. 1134-1148. ISSN 1365-2958

V

Van Aerschot, Manu, Decuypere, Saskia and Downing, Tim (2012) Genetic markers for SSG-resistance in Leishmania donovani and SSG-treatment failure of visceral leishmaniasis patients in the Indian subcontinent. Journal of Infectious Diseases, 206 (5). pp. 752-755. ISSN 1537-6613

W

Walsh, Darren ORCID: 0000-0002-1239-0267 (2022) Not quite a ‘carbon copy’: investigating the relationship between mitochondrial DNA heteroplasmy and one-carbon metabolism. PhD thesis, Dublin City University.

Wallace, Robert G. (2020) Models of vascular injury and the potential therapeutic benefits of magnesium supplementation. PhD thesis, Dublin City University.

Webb, Andrew Edward (2015) Immunoinformatics: towards an understanding of species-specific protein evolution using phylogenomics and network theory. PhD thesis, Dublin City University.

Walsh, Thomas A. (2013) The evolution of the mammal placenta — a computational approach to the identification and analysis of placenta-specific genes and microRNAs. PhD thesis, Dublin City University.