
\chapter{List of Publications}

A number of publications resulted from the work carried out throughout the course of this thesis and are listed below:

\begin{itemize}
	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{Crosstalk and the Cooperation of Collectively Autocatalytic Reaction Networks}, To appear in Proceedings of the IEEE Congress on Evolutionary Computation (CEC 2009), Trondheim, Norway.
		
	\item \textbf{Decraene J.}, \textit{Closure in Artificial Cell Signalling Networks: Investigating the Origins of Cognition in Collectively Autocatalytic Reaction Networks}, In Proceedings of the Second International Conference on Bio-inspired Systems and Signal Processing (BioSignals 2009), Porto, Portugal.

	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{Unexpected Evolutionary Dynamics in a String-based Artificial Chemistry }. In S. Bullock, J. Noble, R. A. Watson, and M. A. Bedau (Eds.) In Proceedings of the Eleventh International Conference on Artificial Life (Alife 2008), pp.158-165, MIT Press, Cambridge, MA. Winchester, UK.
			
	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{Modeling and Evolving Biochemical Networks: Insights into Communication and Computation from the Biological Domain}, In Proceedings of the China-Ireland International Conference on Information and Communications Technologies (CIICT 2008), Beijing, People's Republic of China.
	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{Exploring Evolutionary Stability in a Concurrent Artificial Chemistry}. In Proceedings of the European Conference on Complex Systems (ECCS 2008), Jerusalem, Israel. 
	
		
	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{Evolving Artificial Cell Signaling Networks: Perspectives and Methods}. In F. Dressler, I. Carreras, editors, Advances in Biologically Inspired Information Systems: Models, Methods, and Tools. Series Studies in Computational Intelligence, Vol. 69, pp 165-184, Springer Verlag, 2007.
	
	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{Studying Complex Adaptive Systems using Molecular Classifier Systems}. In Proceedings of the European Conference on Complex Systems (ECCS 2007), Dresden, Germany.
	
	
	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{A Molecular Approach to Complex Adaptive Systems}. In Proceedings of the IEEE (UK\&RI chapter) Conference on Cybernetic Systems (SMC 2007), Dublin, Ireland.
	
	
	\item \textbf{Decraene J.}, \textit{On the Emergence and Evolution of Artificial Cell Signalling Networks}, In Proceeding of the European Graduate Student Workshop on Evolutionary Computation (EvoPhD 2007), Valencia, Spain.
	
	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{The Holland Broadcast Language and the Modeling of Biochemical Networks}. In Proceedings of the 10th European Conference on Genetic Programming (EuroGP 2007), Lecture Notes in Computer Science, Vol. 4445, Springer, Valencia, Spain.
	
	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{Evolving Artificial Cell Signaling Networks using Molecular Classifier Systems}. In Proceedings of the 1st international conference on Bio inspired models of network, information and computing systems (Bionetics 2006), ACM Press, Cavalese, Italy.
	
	\item \textbf{Decraene J.}, Dittrich P., Hinze T., Lenser T., McMullin B., Mitchell G.G., \textit{A Multidisciplinary Survey of Modeling Techniques for Biochemical Networks}. In Proceedings of the Integrative Post-Genomics Conference (IPG 2006), Lyon, France.
	
	\item \textbf{Decraene J.}, Mitchell G.G., McMullin B., \textit{Evolving Artificial Cell Signaling Networks}. In Proceedings of the European Conference on Complex Systems (ECCS 2006), Oxford, UK. 
	
	\item \textbf{Decraene J.}, Mitchell G.G., Kelly C., McMullin B., \textit{An Approach to Evolving Cell Signalling Networks in silico}. In Proceedings of the International Workshop on Systems Biology (IWSC 2006), Maynooth, Ireland.
	
	\item \textbf{Decraene J.}, \textit{The Holland Broadcast Language}, Technical report ALL-06-01, ALife Lab, RINCE, School of Electronic Engineering, Dublin City University, 2006.
	\end{itemize}
	
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